diff --git a/convert/convert_qwen25vl.go b/convert/convert_qwen25vl.go
index 4d8d248ca..2008f2d16 100644
--- a/convert/convert_qwen25vl.go
+++ b/convert/convert_qwen25vl.go
@@ -18,8 +18,9 @@ type qwen25VLModel struct {
 		InChannels       uint32  `json:"in_chans"`
 		NumHeads         uint32  `json:"num_heads"`
 		PatchSize        uint32  `json:"patch_size"`
-		SpatialMergeSize uint32  `json:"spatial_merge_size"` // TODO: is this set?
+		SpatialMergeSize uint32  `json:"spatial_merge_size"`
 		SpatialPatchSize uint32  `json:"spatial_patch_size"`
+		WindowSize       uint32  `json:"window_size"`
 		RopeTheta        float32 `json:"rope_theta"`
 	} `json:"vision_config"`
 }
diff --git a/model/models/qwen25vl/model_vision.go b/model/models/qwen25vl/model_vision.go
index 65980d166..f25d3e1aa 100644
--- a/model/models/qwen25vl/model_vision.go
+++ b/model/models/qwen25vl/model_vision.go
@@ -100,6 +100,9 @@ type VisionModelOptions struct {
 	eps              float32
 	ropeTheta        float32
 	outHiddenSize    int
+	spatialMergeSize int
+	spatialPatchSize int
+	windowSize       int
 }
 
 type PatchEmbedding struct {
@@ -184,6 +187,20 @@ func (m *VisionModel) Forward(ctx ml.Context, pixelValues ml.Tensor, grid *Grid)
 	)
 
 	positionEmbedding := m.positionalEmbedding(ctx, grid)
+
+	windowIndex := m.windowIndex(ctx, grid)
+
+	spatialMergeUnit := m.spatialMergeSize * m.spatialMergeSize
+
+	hiddenStates = hiddenStates.Reshape(ctx, hiddenStates.Dim(0)*spatialMergeUnit, hiddenStates.Dim(1)/spatialMergeUnit)
+	hiddenStates = hiddenStates.Rows(ctx, windowIndex)
+	hiddenStates = hiddenStates.Reshape(ctx, hiddenStates.Dim(0)/spatialMergeUnit, hiddenStates.Dim(1)*spatialMergeUnit)
+
+	positionEmbedding = positionEmbedding.Reshape(ctx, positionEmbedding.Dim(0)*spatialMergeUnit, positionEmbedding.Dim(1)/spatialMergeUnit)
+	positionEmbedding = positionEmbedding.Rows(ctx, windowIndex)
+	positionEmbedding = positionEmbedding.Reshape(ctx, positionEmbedding.Dim(0)/spatialMergeUnit, positionEmbedding.Dim(1)*spatialMergeUnit)
+	positionEmbedding = positionEmbedding.Concat(ctx, positionEmbedding, 0)
+
 	cos, sin := positionEmbedding.Cos(ctx), positionEmbedding.Sin(ctx)
 	cos = cos.Reshape(ctx, cos.Dim(0), 1, cos.Dim(1))
 	sin = sin.Reshape(ctx, sin.Dim(0), 1, sin.Dim(1))
@@ -196,6 +213,45 @@ func (m *VisionModel) Forward(ctx ml.Context, pixelValues ml.Tensor, grid *Grid)
 	return m.PatchMerger.Forward(ctx, hiddenStates, m.eps)
 }
 
+func (m *VisionModel) windowIndex(ctx ml.Context, grid *Grid) ml.Tensor {
+	vitMergerWindowSize := m.windowSize / m.spatialMergeSize / m.patchSize
+
+	llmGridH := grid.Height / m.spatialMergeSize
+	llmGridW := grid.Width / m.spatialMergeSize
+
+	// Calculate window parameters
+	numWindowsH := int(math.Ceil(float64(llmGridH) / float64(vitMergerWindowSize)))
+	numWindowsW := int(math.Ceil(float64(llmGridW) / float64(vitMergerWindowSize)))
+
+	// Initialize index_new slice
+	var index []int32
+
+	// Process each window without padding
+	for wh := range numWindowsH {
+		for ww := range numWindowsW {
+			// Calculate window boundaries
+			hStart := wh * vitMergerWindowSize
+			wStart := ww * vitMergerWindowSize
+			hEnd := min(hStart+vitMergerWindowSize, llmGridH)
+			wEnd := min(wStart+vitMergerWindowSize, llmGridW)
+
+			// Collect indices for this window
+			for h := hStart; h < hEnd; h++ {
+				for w := wStart; w < wEnd; w++ {
+					index = append(index, int32(h*llmGridW+w))
+				}
+			}
+		}
+	}
+
+	t, err := ctx.Input().FromIntSlice(index, len(index))
+	if err != nil {
+		panic(err)
+	}
+
+	return t
+}
+
 // positionalEmbedding generates rotary position embeddings for attention mechanisms
 // This implements rotary embeddings using spatial merging patterns for grid-based
 // vision transformers
@@ -245,8 +301,6 @@ func (m *VisionModel) positionalEmbedding(ctx ml.Context, grid *Grid) ml.Tensor
 	// Use position indices to look up corresponding frequency values
 	positionalEmbedding := freqs.Rows(ctx, pos)
 	positionalEmbedding = positionalEmbedding.Reshape(ctx, positionalEmbedding.Dim(0)*2, positionalEmbedding.Dim(1)/2)
-	positionalEmbedding = positionalEmbedding.Concat(ctx, positionalEmbedding, 0)
-
 	return positionalEmbedding
 }
 
@@ -271,6 +325,9 @@ func newVisionModel(c fs.Config) *VisionModel {
 			eps:              c.Float("vision.attention.layer_norm_epsilon", 1e-6),
 			ropeTheta:        ropeTheta,
 			outHiddenSize:    outHiddenSize,
+			spatialMergeSize: int(c.Uint("vision.spatial_merge_size", 2)),
+			spatialPatchSize: int(c.Uint("vision.spatial_patch_size", 2)),
+			windowSize:       int(c.Uint("vision.window_size", 112)),
 		},
 	}
 }